I just revisited my coolant flow concerns after looking at this thread:
http://www.sonexbuilders.net/viewtopic.php?f=7&t=6031 , and the Sonex revision that addressed the same thing. I got the appropriate parts and installed them, but when I removed the original thermostat adapter fitting I found that it wasn't blocking the flow at all with the parts I had on there to begin with. So that wasn't my problem!
I tried connecting a piece of clear tubing to the outlet at the turbo, right after the t-stat, to see what the flow looked like, and I found that the pump could not even push the coolant up to the level of the catch can! It would travel up the clear tube about 3" and then just hold it there. So that would explain why almost nothing seems to happen when I run the pump.
I wasn't sure if there was some kind of obstruction inside the turbo that could be blocking the coolant, so I pulled the hose off the pump outlet and connected a clear tube there, and again it could barely push the fluid even a few inches higher than the turbo.
So, I don't think it's a blockage issue I'm having, I think there's still so much air in the lines that the pump can't even circulate the coolant all the way through to bleed itself. I think I'm going to rig up some kind of positive pressure filler with a garden sprayer or something, and try to force all the air through the radiator and pump and see if that helps it.