I would first of all check with Sonex but I fear that, like others have mentioned, that is way too much end play. The 0.003 to 0.006 as required is normally hardly even noticeable on the prop end.
If it's just a matter of adding a few shims, it's not as big a job as you might think. Yes, you will have to remove the accessory case, alternator, fly wheel, etc. but I think you could knock all this over in half a day or so. You might want to find someone in the neighborhood who has assembled their own AeroVee before to help you with this.
The only thing you might struggle with is removing the gland nut. If it does not come off easily, an impact wrench is the tool for the job here, BUT, it is strongly recommended not to re-use it if that was indeed required.
One final issue is measuring the number of shims for the correct end play, Sonex has you do this when the case halves are not joined yet, this is easy. Measuring this now will require a specialized tool, you can either make this yourself:
http://www.aircooledtech.com/end_play/, or buy one:
http://www.ebay.com.au/itm/VW-ENGINE-CR ... 1073312139Now here's what I believe may be the bad news:
As I mentioned before, that is A LOT of play, seriously. I'm not even sure you can install enough and/or thick enough shims to fix this problem if that is really the only cause of the problem. I fear something else (more serious) might be wrong here.
BUT, before you do anything, contact Sonex.